PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G531400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26317.1 Da PI: 5.5409 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.3e-24 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA ELSvLC+ +vav+ifs tgkl++yss Prupe.1G531400.1.p 19 ARQVTFSKRRRGIFKKAAELSVLCESKVAVVIFSATGKLFDYSS 62 69****************************************96 PP | |||||||
2 | K-box | 40.1 | 1.6e-14 | 99 | 173 | 24 | 98 |
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 L ke+++ +++R+++ edLe+L++ eLq+Leq ++ sl ++ ++K+el +++i l +k el e+n++Lr+ + Prupe.1G531400.1.p 99 LSKELKEKSHQLRQMKAEDLEELNFDELQKLEQLVDASLGRVIETKEELRMSEIMALERKGAELVEANNQLRQTM 173 444555555789************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.633 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-32 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-22 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-27 | 6 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-21 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-22 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-22 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.091 | 89 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-11 | 94 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVKMMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAAELSV LCESKVAVVI FSATGKLFDY 60 SSSSIKDVIE RYKAHTNGVE KSDKPSVELQ LENENQIGLS KELKEKSHQL RQMKAEDLEE 120 LNFDELQKLE QLVDASLGRV IETKEELRMS EIMALERKGA ELVEANNQLR QTMMLSGGNT 180 GPTLMEPERL SNNIGGGGEE EGMSSESAIS TTCNSALSLS PSLGDDSDDV TLSLKLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-16 | 4 | 75 | 1 | 72 | MEF2C |
5f28_B | 5e-16 | 4 | 75 | 1 | 72 | MEF2C |
5f28_C | 5e-16 | 4 | 75 | 1 | 72 | MEF2C |
5f28_D | 5e-16 | 4 | 75 | 1 | 72 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.4829 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G531400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863256 | 0.0 | DQ863256.1 Prunus persica dam3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419179.1 | 1e-150 | MADS-box protein JOINTLESS isoform X4 | ||||
Swissprot | Q9FUY6 | 1e-67 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A6XN01 | 1e-170 | A6XN01_PRUPE; Dam3 | ||||
TrEMBL | M5XG02 | 1e-170 | M5XG02_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25047 | 1e-171 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15110 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-57 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G531400.1.p |
Publications ? help Back to Top | |||
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