PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G531100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28756.7 Da PI: 5.8394 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.3 | 5.4e-25 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr gilKKA ELSvLC+ evav+ifs tgkl++yss Prupe.1G531100.2.p 11 KKIDNLPARQVTFSKRRRGILKKAAELSVLCESEVAVVIFSATGKLFDYSS 61 689999*******************************************96 PP | |||||||
2 | K-box | 56.2 | 1.5e-19 | 88 | 171 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++++ +L ke+e+ r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l++k el e+nk+Lr++ Prupe.1G531100.2.p 88 LQPEKENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDELIMSEIMALKRKRAELVEANKQLRQR 171 5667788899************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-34 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.754 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.95E-35 | 5 | 72 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-28 | 5 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-21 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.998 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.3E-17 | 91 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI LKKAAELSVL CESEVAVVIF SATGKLFDYS 60 SSSMKDVIER YQAHINGAEK FDEPSIELQP EKENHIRLSK ELEEKSRQLR QMKGEDLEEL 120 NFDELQKLEQ LVDASLGRVI ETKDELIMSE IMALKRKRAE LVEANKQLRQ RASNYHNHML 180 SRGNIGPALM EPERLNNNIG GGGEEEGMSS ESATSTTCNS APSLSLEDDS DDVTLSLKLG 240 PECGEKDNSL TTKKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 3 | 74 | 1 | 72 | MEF2C |
5f28_B | 4e-18 | 3 | 74 | 1 | 72 | MEF2C |
5f28_C | 4e-18 | 3 | 74 | 1 | 72 | MEF2C |
5f28_D | 4e-18 | 3 | 74 | 1 | 72 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G531100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863253 | 0.0 | DQ863253.2 Prunus persica dam1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419189.1 | 0.0 | MADS-box protein JOINTLESS isoform X1 | ||||
Swissprot | Q9FUY6 | 5e-68 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A251RHA4 | 0.0 | A0A251RHA4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008219269.1 | 1e-142 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-58 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G531100.2.p |
Publications ? help Back to Top | |||
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