PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G531100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 356aa    MW: 39431.1 Da    PI: 5.2365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G531100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.1e-251161151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n   rqvtfskRr gilKKA ELSvLC+ evav+ifs tgkl++yss
  Prupe.1G531100.1.p 11 KKIDNLPARQVTFSKRRRGILKKAAELSVLCESEVAVVIFSATGKLFDYSS 61
                        689999*******************************************96 PP
2K-box561.7e-19881721498
               K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          +  ++++ +L ke+e+  r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i  l++k  el e+n++Lr+++
  Prupe.1G531100.1.p  88 LQPEKENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDELIMSEIMALKRKGAELVEANNQLRQRM 172
                         5667788899************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-34362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.754363IPR002100Transcription factor, MADS-box
CDDcd002652.28E-35572No hitNo description
PRINTSPR004048.0E-24525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-28576IPR002100Transcription factor, MADS-box
PfamPF003195.4E-211259IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.27888178IPR002487Transcription factor, K-box
PfamPF014866.6E-1791172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI LKKAAELSVL CESEVAVVIF SATGKLFDYS  60
SSSMKDVIER YQAHINGAEK FDEPSIELQP EKENHIRLSK ELEEKSRQLR QMKGEDLEEL  120
NFDELQKLEQ LVDASLGRVI ETKDELIMSE IMALKRKGAE LVEANNQLRQ RMVMLSRGNI  180
GPAPTEPERF VNNIGGGGEE GMSSESATNA TISSCSSGPS LSLEDDCSDV TLALKLGLSP  240
ASIEDVLWVS VTAAFVTVEG EVDVENPSSW SKERSQVISV EVLAMARYSA SVEDRATFAL  300
KGVSHYIYRI QVFFVGVITV QIGSGSPQNN GQINYKITVW FGSILTKVMK KTEPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17374172MEF2C
5f28_B2e-17374172MEF2C
5f28_C2e-17374172MEF2C
5f28_D2e-17374172MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G531100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632550.0DQ863255.1 Prunus persica dam2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419192.11e-139MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY61e-66JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A251RHD00.0A0A251RHD0_PRUPE; Uncharacterized protein
STRINGXP_008219270.11e-131(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-59AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]