PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G517200.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 244aa MW: 27117.2 Da PI: 10.394

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G517200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.9	6.4e-12	15	91	11	91
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++rl+lp f ++ ++kk + + + + sW v+l ++ ++ +++GW+ Fv+ +gL+ g++vvF+++g++ f+ Prupe.1G517200.1.p 15 GFNKRLSLPVAFSSSLSEKK-LD-KAV-IKSCLGSWCVRL--GRSVDGvLSFEEGWEVFVNHHGLNIGEMVVFEHKGKMVFN 91 45678*****98886554.33.344.4556689*..7777776999********************98877774 PP
2	B3	55.9	7.9e-18	135	220	3	85
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 +++++s+ + + +++p kfa+++g++ ++ ++l+d+sgrsW + ++ + ++ r + +kGW +F +an+Lk+gD+++F l+ Prupe.1G517200.1.p 135 TTMSKSHGDPLhAYMTFPAKFARSNGIVATS--RIILKDPSGRSWPLIISKWESKTRgsyrIATRKGWYKFYEANKLKDGDVCIFNLK 220 555555555544779*********99766..6***********8855554445546777******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.869	5	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.3E-15	5	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-13	5	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.56E-11	8	95	No hit	No description
SMART	SM01019	1.1E-9	8	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.5E-9	16	90	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-19	125	239	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.0E-18	126	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.99E-18	132	225	No hit	No description
SMART	SM01019	2.9E-12	133	242	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.915	134	237	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-15	146	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAGKCSVFFK FLVPGFNKRL SLPVAFSSSL SEKKLDKAVI KSCLGSWCVR LGRSVDGVLS 60 FEEGWEVFVN HHGLNIGEMV VFEHKGKMVF NVVAYESLGS EKEYELQSDK HQHDYKGKRT 120 LKGTASSSSR TLFSTTMSKS HGDPLHAYMT FPAKFARSNG IVATSRIILK DPSGRSWPLI 180 ISKWESKTRG SYRIATRKGW YKFYEANKLK DGDVCIFNLK PVSSKSGSKS THVLEVQITR 240 GGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G517200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020413753.1	1e-180	B3 domain-containing protein REM8-like
TrEMBL	A0A251RGD5	1e-178	A0A251RGD5_PRUPE; Uncharacterized protein
STRING	XP_008357222.1	1e-58	(Malus domestica)
STRING	XP_008377458.1	3e-63	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14574	9	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31680.1	1e-23	B3 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G517200.1.p