PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G452000.3.p
Common NamePRUPE_ppa000676mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 1036aa    MW: 113705 Da    PI: 5.1718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G452000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183783148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Prupe.1G452000.3.p 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                        799****************************9.************986 PP
2Myb_DNA-binding66.55e-2189135148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Prupe.1G452000.3.p  89 KGPWSKEEDEIIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                         79******************************.*************97 PP
3Myb_DNA-binding47.15.5e-15141183145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT++E++ l++a++++G++ W+   + ++ gRt++ +k++w+
  Prupe.1G452000.3.p 141 KEAWTQDEELALIRAHQMYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1773283IPR017930Myb domain
SMARTSM007171.2E-153685IPR001005SANT/Myb domain
PfamPF002492.8E-163783IPR001005SANT/Myb domain
SuperFamilySSF466896.1E-163893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-243995IPR009057Homeodomain-like
CDDcd001672.10E-144083No hitNo description
PROSITE profilePS5129434.56784139IPR017930Myb domain
SuperFamilySSF466891.09E-3186182IPR009057Homeodomain-like
SMARTSM007174.2E-2088137IPR001005SANT/Myb domain
PfamPF002492.7E-1989135IPR001005SANT/Myb domain
CDDcd001671.01E-1791135No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2896139IPR009057Homeodomain-like
PROSITE profilePS5129419.147140190IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-21140190IPR009057Homeodomain-like
SMARTSM007172.1E-14140188IPR001005SANT/Myb domain
PfamPF002492.1E-13141184IPR001005SANT/Myb domain
CDDcd001675.35E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MEGDRTNSTP SEGLGDSIQK VRALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLT QFQGLPHVGH QNQSILSSSS RMQSSGDDSG AKAAEGEEIS  240
ECSQDSTVAG CFLSATEMTN VVPHPREEFQ INEVSRLGND PSCSPASCSE PYYPSIGDAT  300
FSIPEIPPEM VCSKFIEQNF SHEAGASMSG NFQFNLHELP INSSLECGQE SSRMHTHCVG  360
CNESHEGVNA PFQTSTSMGN MAVGFVKSEH MLISDDECCR VLFSDAMNGG CFSSGDFTNG  420
ANMVDLGACT DSVLLQPSNL QISETGRTSA SQVYHPLSSD VTGTSCSQVV SAHEGPLIYA  480
GEPSHLFRVQ EQEFVTNSND GFIYTNDSAS NDTGMQEQSD LVKDPSKLVP VNTFDSGLDS  540
QNCPVDVRSD EQTEQQDGGA LCYEPPRFPS LDIPFFSCDL VQSGNDMQQE YSPLGIRQLM  600
MSSMNCLTPY RLWDSPSRES SPDAVLKSAA KTFTGTPSIL KKRHRDLLSP LSPLSDRRID  660
KRLGTDLTSS LARDFSRLDV MFEDSEEKTT LLSPSSNKNR NSDSPSEDKE NKGTCESRIE  720
KGTDSAALSD DGIAHNDFDN GESQEKTKQF QGIADIEAKN KVDVIPTSQI TSGVLVEHNA  780
NDLLLCSPVG CKAEKAMGTS TRTPRSQFRK SFEATNPGVP SKSFSARQCA SVKSPTICVK  840
KHESYSLVDT CVQSDSLSVH PETTGDNAGN DISIENIFGD TPFKRSIESP SAWKSPWFIN  900
SFVPGPRVDT EISIEDIGFF MSPGDRSYDA IGLMKQISEQ TAAAYANAQE VLGNETPETL  960
FRERRKNQAL VDPENNHGPP NQPGSSSLSA ANVLVERRTL DFSECGTPGK GTENAKSSNA  1020
KTFSSPSSYL LKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G452000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419274.10.0transcription factor MYB3R-1
TrEMBLA0A251RCW90.0A0A251RCW9_PRUPE; Uncharacterized protein
STRINGEMJ265960.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein