PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G451000.1.p | ||||||||
Common Name | PRUPE_ppa002998mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CPP | ||||||||
Protein Properties | Length: 623aa MW: 67523 Da PI: 8.5158 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.4 | 1.6e-14 | 141 | 179 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C++C+N+ + Prupe.1G451000.1.p 141 KQKQCNCKNSRCLKLYCECFAAGIYCEG-CNCSNCHNNVD 179 89*************************9.********986 PP | |||||||
2 | TCR | 50 | 5.8e-16 | 225 | 264 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks ClkkYCeCf+a+ Cse+CkC +CkN e Prupe.1G451000.1.p 225 KHNKGCHCRKSGCLKKYCECFQANILCSENCKCMGCKNFE 264 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.7E-17 | 140 | 180 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.925 | 141 | 265 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.7E-11 | 142 | 177 | IPR005172 | CRC domain |
SMART | SM01114 | 1.3E-19 | 225 | 266 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.9E-12 | 228 | 263 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MEQSETVSQI APKKLARQLD FTTVCRASAN AALPEVQLQL QLQLQLQSPS QAQLSQNSPA 60 KSHVHLQLQS PPPPPVAQPP KQLTPPPAIP QFLARPSPAP AANSRIQHPV HKLSISTSQA 120 SKQESPISRQ RGDGKDGTPK KQKQCNCKNS RCLKLYCECF AAGIYCEGCN CSNCHNNVDN 180 EAARQEAVGL ILERNPNAFR PKIASSPQES RDGREDAGEI QAPGKHNKGC HCRKSGCLKK 240 YCECFQANIL CSENCKCMGC KNFEGSEERR ALHHEDHNTV AYMQQANAAI SGAIGSSGYG 300 TPLVSRKRKS YELYFGTTNQ TTHPIKQPQQ VHFSSITKQE NHLRPPIASS SLSSVPTCRT 360 ANAAVSRSSK STYRSPLADI IQSKNIKDLC SRLVVVSGAA AEALAGNRRR ETIDESSTNL 420 STQEGKECKK EHDVQNSVHD DHLGVNEADR DESSYSGLNG GDVQNSRPMS PGTLALMCDE 480 QDKMFMAAGL PNGVGSSSPS MTQKSTQEIG CTEVYAEQER LVLIGFRDFL NHLITRGSIK 540 ETMCSPQAKR ERVSQKEPVQ GGTAKPSPEP RCQKEAYSNG IAKSPVSANG KMLHPVTTLH 600 PVATVTSGDN DLSLKVGLPI EK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-30 | 132 | 274 | 1 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-30 | 132 | 274 | 1 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 309 | SRKRKS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G451000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222027.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-134 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A251RD20 | 0.0 | A0A251RD20_PRUPE; Uncharacterized protein | ||||
STRING | EMJ23226 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-126 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G451000.1.p |
Entrez Gene | 18793994 |