PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G438000.1.p | ||||||||
Common Name | PRUPE_ppb024440mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25353.1 Da PI: 10.2609 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.8 | 1.7e-17 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v+ +l lp +f++++ k ++ ++l de+g ++++ + ++++ l++GW++F+ a++L +gD +vF+l++ ++f Prupe.1G438000.1.p 129 FVKPMLQSHVTGGFWLGLPIHFCNKNLPK--RDESVILVDEDGDEYQIVY--LANKRG--LSGGWRGFAIAHELVDGDALVFQLIRPKTF- 212 89*********************999433..4557***************..555555..9************************97888. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Prupe.1G438000.1.p 213 -KVYIIR 218 .888877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-24 | 123 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-21 | 124 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.44E-27 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 2.1E-16 | 129 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-25 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MVAANLSYEE SRRQRMEENK KRMEALNLPQ LAQALKAPSF PKPSPMKRAK PRTVEKQMVV 60 VRRSSRVANL PTPVYKEIAV DPLRMPRRHS TSKHRDFSNR VYASDEARAE ATERAEELES 120 GLGSDHPTFV KPMLQSHVTG GFWLGLPIHF CNKNLPKRDE SVILVDEDGD EYQIVYLANK 180 RGLSGGWRGF AIAHELVDGD ALVFQLIRPK TFKVYIIRVE RT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G438000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221765.1 | 1e-165 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q69V36 | 1e-79 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | M5XAI5 | 1e-164 | M5XAI5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22964 | 1e-165 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-70 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G438000.1.p |
Entrez Gene | 18788293 |
Publications ? help Back to Top | |||
---|---|---|---|
|