PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G437900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26429.6 Da PI: 10.3836 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.3e-17 | 134 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+++ps+v+ +l l +f++eh + ++ +tl de+g+++ + rk++ l++GWk+F+ a++L +gD +vF+l++r+ Prupe.1G437900.1.p 134 FVKTMLPSHVSGGFWLGLQVQFCKEHlpK----GDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRRTV 216 89************************543....4458***************656665....*************************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Prupe.1G437900.1.p 217 F--KVYILR 223 9..777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.45E-24 | 128 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 129 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.19E-28 | 132 | 223 | No hit | No description |
Pfam | PF02362 | 6.6E-15 | 134 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-25 | 134 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.491 | 134 | 225 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGKMVMAKSK LSYEESRRQR LEENKKRMEA LNLPQLAQAL KTTSSPKPSP MKRTKPRTVE 60 KQMVVVRRSS RVANLPTPVY KEVVVDRVMI PRKSYSSRHR DLSNRVYASD EARAEAMERA 120 ENLESGLGSD HPIFVKTMLP SHVSGGFWLG LQVQFCKEHL PKGDEVMTLI DEDGNEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRRTVFKVY ILRVGRPEDG NKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G437900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422916.1 | 1e-173 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 4e-79 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A251REU1 | 1e-172 | A0A251REU1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220213.1 | 1e-171 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-75 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G437900.1.p |
Publications ? help Back to Top | |||
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