PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G437800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 21928.1 Da PI: 8.0806 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.4e-14 | 111 | 190 | 2 | 87 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+ +ps+ + l+l ++f+ e+ +k ++ +tl d +g+++ ++ +r+ l++GWkeF+ a++L egD +vF+l++ Prupe.1G437800.1.p 111 VKTIVPSYISGGFFLCLKRQFCMENLSK--GDEVMTLVDVDGNEYLTRY----LAQRFGLSAGWKEFAFAHDLVEGDALVFQLIRP 190 68999*****************999444..44589**************....455689***********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-16 | 105 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-18 | 105 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.73E-20 | 108 | 191 | No hit | No description |
SMART | SM01019 | 2.1E-13 | 110 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.18 | 110 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-11 | 111 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAKPKWLYEE SRQQSLEENR KKMAALNLPQ LAQLAHPAPV ELARPRTFEK HLVQVRRSTR 60 VSNHSSPVYK ELAEGFVEPN KRFCSDEARA AALHEAQELV SGLGSDNPTI VKTIVPSYIS 120 GGFFLCLKRQ FCMENLSKGD EVMTLVDVDG NEYLTRYLAQ RFGLSAGWKE FAFAHDLVEG 180 DALVFQLIRP TAFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G437800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021820265.1 | 1e-118 | B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_021820267.1 | 1e-118 | B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A251RC54 | 1e-143 | A0A251RC54_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ22961 | 1e-110 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G437800.1.p |