PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G424400.1.p | ||||||||
Common Name | PRUPE_ppa014964mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 23967.3 Da PI: 8.8241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.9e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++ Prupe.1G424400.1.p 2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 6*********************9999999999*********************************************************** PP DUF260 87 leqlkaelal 96 ++q+++e++l Prupe.1G424400.1.p 93 VCQSAVETVL 102 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.4 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLTPSLHK 120 SSETSSRGAC TLQNLYYPSV PSAYYEAERV QPFDAGLSLK PNLTAGERGR GRGMRSSSCV 180 STAVEKRRRD TVSFSSEESV MTSTTSFERG GGLKDRKVLN LFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G424400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224007.1 | 1e-162 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 1e-62 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | M5XI77 | 1e-161 | M5XI77_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25206 | 1e-161 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 9e-65 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G424400.1.p |
Entrez Gene | 18789344 |