PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G416400.1.p
Common NamePRUPE_ppa019554mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 293aa    MW: 31891.6 Da    PI: 7.5913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G416400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.7e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W+++Ed  l+ + + +G+g +W + +++ g++R++k+c++rw++yl
  Prupe.1G416400.1.p 14 RGPWSPDEDATLKSYLETHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding46.11.2e-1469111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd ++  + +q+G++ W+ Ia+ m  gRt++++k++w++
  Prupe.1G416400.1.p  69 GCFTEEEDSIICSLYNQMGSR-WSVIASQMS-GRTDNDVKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.443962IPR017930Myb domain
SuperFamilySSF466891.02E-2611109IPR009057Homeodomain-like
SMARTSM007171.0E-101364IPR001005SANT/Myb domain
PfamPF002495.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001675.13E-81662No hitNo description
PROSITE profilePS5129421.66963117IPR017930Myb domain
SMARTSM007175.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.2E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
CDDcd001676.73E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRTPCCDKD NVKRGPWSPD EDATLKSYLE THGTGGNWIL LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGC FTEEEDSIIC SLYNQMGSRW SVIASQMSGR TDNDVKNYWN TKLKKKLFGG  120
KQNLTTKNSK EPTNNATLPG SAASLALPCV PKAEPQDSAF STFQTQIPPT LHMLTDVNSG  180
LNAYNQTWTL NSPDQLYSSK VMAFSDFGAS SKKSYTTVSL SQDGSNISDS SSIAAVDKCA  240
SLPGNGSLDD SGLFTDFGLP YDVNYGMCFG EKTSEFGPAS CTNFGDLFSS SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G416400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227190.10.0transcription factor MYB36
TrEMBLM5XR320.0M5XR32_PRUPE; Uncharacterized protein
STRINGEMJ283890.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-69myb domain protein 36