PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G413400.1.p | ||||||||
Common Name | PRUPE_ppa016461mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26081.9 Da PI: 10.7179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +v + ++lG+g+Wk I+r++ ++Rt+ q+ s+ qky Prupe.1G413400.1.p 129 AWSEEEHRVFVMGLEKLGKGDWKGISRHFVTTRTPTQVASHAQKY 173 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.664 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 15.374 | 122 | 178 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-17 | 125 | 176 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.84E-17 | 125 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 126 | 176 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 127 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-9 | 129 | 174 | No hit | No description |
Pfam | PF00249 | 8.8E-12 | 129 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRKCSQCGN MGHNSRTCGV RQPRQRGGGG GGGLRLFGVQ VLDLSSSSSS SNSLISRKKK 60 NIIIKRCPPS MVHCLPSVAA SSPTAPSSST SSRLQSRALI DLNSEKMSNG YPSDGLTALP 120 QENNNKGVAW SEEEHRVFVM GLEKLGKGDW KGISRHFVTT RTPTQVASHA QKYFLRINTL 180 NKKRRRPNLF YLSAVFSSTL AAEPAAPLPT AATDLELELA APIPLDQQTK PCPRALVIAP 240 IC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G413400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021800512.1 | 1e-111 | transcription factor MYBS3-like | ||||
TrEMBL | M5XUN8 | 1e-178 | M5XUN8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25363 | 1e-179 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-31 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G413400.1.p |
Entrez Gene | 18792064 |