PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G410400.8.p | ||||||||
Common Name | PRUPE_ppa007300mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 375aa MW: 41952.8 Da PI: 4.6739 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111 | 8.6e-35 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k++e++ed++++ ++sws+ nsfvv+d+++f++++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++ Prupe.1G410400.8.p 42 FLTKTFEMVEDPSTDAIVSWSRARNSFVVWDSHKFSTTLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRH 123 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++ikr+++ Prupe.1G410400.8.p 124 LLKTIKRRRH 133 *******975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.54E-34 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-60 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.7E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MDGVAVKEEE IVTCTVGSSS SSSSSFSPQP IEGLHEVGPP PFLTKTFEMV EDPSTDAIVS 60 WSRARNSFVV WDSHKFSTTL LPRYFKHGNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG 120 QRHLLKTIKR RRHMSQSMQQ EGGGGACVEL GQYGLETELE RLKRDRNVLM TEIVRLRQQQ 180 QNSKEQVMAM EGRLQTTEKK QQQIMAFLAK ALNSPSFIQN LVEKKARNKE LRGMEIGRKR 240 RLSASPSVEN LQEKPKTHVA DYSASQDQGE LETIGSQIET FFSAAALDNE SSSDIIDPHS 300 SSVGGNFGIV NETTWEELWS DELIGGNPEE DVIVVGDESD IDVAVEDLVA EPADWGEDLQ 360 ELVDQMGYLI RSKP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 40 | 131 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 124 | 130 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G410400.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223311.2 | 0.0 | heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | P41152 | 1e-140 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | M5XZ21 | 0.0 | M5XZ21_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24510 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-127 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G410400.8.p |
Entrez Gene | 18788813 |
Publications ? help Back to Top | |||
---|---|---|---|
|