PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G405300.1.p
Common NamePRUPE_ppa023812mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 248aa    MW: 28137.3 Da    PI: 5.4504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G405300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed+ll+d+++ +G g W++  +  g++R++k+c++rw++yl
  Prupe.1G405300.1.p 14 KGPWTAQEDKLLADYIRDHGEGKWSSLQKQAGLKRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.61.1e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Prupe.1G405300.1.p  67 RGNITQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTN 111
                         7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.822965IPR017930Myb domain
SuperFamilySSF466891.68E-2911108IPR009057Homeodomain-like
SMARTSM007174.1E-141363IPR001005SANT/Myb domain
PfamPF002495.7E-161461IPR001005SANT/Myb domain
CDDcd001673.22E-101661No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2465115IPR009057Homeodomain-like
PROSITE profilePS5129418.00366116IPR017930Myb domain
SMARTSM007175.4E-1466114IPR001005SANT/Myb domain
PfamPF002495.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.53E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRRPCCSKE GVKKGPWTAQ EDKLLADYIR DHGEGKWSSL QKQAGLKRCG KSCRLRWLNY  60
LRPNIKRGNI TQDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT NLCKKPLPNN  120
FVPCRPSEEA SSDPQQEQQS KAEDKLSNVP KYNNQNAESE SSEGSLSSSA TREEEDYSSH  180
DLWMNFYTRE MSLSQFLDTD FSNMSNLFAG VIVGGYSSTK PMHDDDVEAD FGAQLAAFTD  240
LAEEWIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261411527127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G405300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411413.10.0transcription factor WER
TrEMBLA0A251RDC40.0A0A251RDC4_PRUPE; Uncharacterized protein
STRINGXP_008220563.11e-166(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-61myb domain protein 5