PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G398700.1.p | ||||||||
Common Name | PRUPE_ppa008143mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 344aa MW: 38064.5 Da PI: 5.6449 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.2 | 1.9e-09 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H Prupe.1G398700.1.p 4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36 58*****************************55 PP | |||||||
2 | zf-B_box | 27.9 | 4.7e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ Prupe.1G398700.1.p 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP | |||||||
3 | CCT | 69.9 | 6.6e-24 | 282 | 325 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Prupe.1G398700.1.p 282 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 325 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.893 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-15 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.44E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.836 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.16E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 4.0E-11 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.1E-18 | 282 | 324 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 282 | 324 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSGNS AANSAPVVKS VVNFLDDRYF 120 SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL 180 EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS 240 MDVSVVPDGN TTMTDVCDPY TKSMSAAVES THQAVQISSA DREARVLRYR EKRKNRKFEK 300 TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRYGVV PSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1733 | 0.0 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G398700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU939303 | 0.0 | EU939303.1 Prunus persica CONSTANS-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222404.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-141 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | B5THI2 | 0.0 | B5THI2_PRUPE; CONSTANS-like protein | ||||
STRING | EMJ23603 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-134 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G398700.1.p |
Entrez Gene | 18789515 |
Publications ? help Back to Top | |||
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