PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G388300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 102aa    MW: 11245.8 Da    PI: 9.7826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G388300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.22e-1012574591
                        EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3 45 sWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        sW v++   ++ ++   +++GW+eFv+ +gLk g++++Fk++g++ f+
  Prupe.1G388300.1.p 12 SWHVRV--GRTVDGvLSFEEGWEEFVNHHGLKLGEILIFKHNGKRAFN 57
                        899999..6666665999**********************98877663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.898164IPR003340B3 DNA binding domain
CDDcd100171.83E-81253No hitNo description
PfamPF023622.2E-71258IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-101261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-111262IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDKAVIKSCL GSWHVRVGRT VDGVLSFEEG WEEFVNHHGL KLGEILIFKH NGKRAFNVVA  60
YEALGREKRK KPSEATASST SRTSFACTMK KSPDHPTCTN P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G388300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416436.16e-71B3 domain-containing protein At5g18000-like isoform X2
TrEMBLA0A251R9U61e-69A0A251R9U6_PRUPE; Uncharacterized protein
STRINGXP_008339452.12e-21(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-08B3 family protein