PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G388200.2.p
Common NamePRUPE_ppa003541mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 424aa    MW: 46972.6 Da    PI: 8.8761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G388200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1622107899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         s  l+s rl +p +f+ +++g +  s  ++l  +sg+ W+v l   +k g  ++  GW  Fv+++ ++ gDf++F++dg+ +f  +v +f+
  Prupe.1G388200.2.p  22 SADLSSERLKIPERFMIHMEGRT--SGLVSLFGPSGNAWNVDL--IQKNGDLFFHHGWPAFVRDHFVECGDFLIFRYDGELCF--TVLIFD 106
                         66788999********9998884..458***************..77778899*************************99999..999998 PP

                         S CS
                  B3  99 k 99 
                         +
  Prupe.1G388200.2.p 107 Q 107
                         6 PP
2B343.36.6e-142473271394
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         s  l +p kf  +h   ++++++l+l + +g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ +v
  Prupe.1G388200.2.p 247 SYTLNIPCKFSVAHL--PNCKVKLVLHNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVRECEFRVHV 327
                         556899****99996..45999***************9445555667999************************999996665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2210110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-1815106No hitNo description
PROSITE profilePS5086313.66215108IPR003340B3 DNA binding domain
SMARTSM010198.3E-1217108IPR003340B3 DNA binding domain
PfamPF023623.3E-1422107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-22226327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23228327IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-18233327No hitNo description
PROSITE profilePS5086312.661235331IPR003340B3 DNA binding domain
SMARTSM010192.0E-9235331IPR003340B3 DNA binding domain
PfamPF023621.4E-10239327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGRTSGLVSL FGPSGNAWNV  60
DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSEC  120
GQDSSNFEKY MGRKRGREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMC EEATCSKEIK  180
RAEKPGLDIV LCKANASIQN MCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK  240
SFNISGSYTL NIPCKFSVAH LPNCKVKLVL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA  300
FVRYNDIKLG DICIFELVRE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP  360
KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLSQSKA ASKKLGKISP  420
KSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.50571e-135fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G388200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221817.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A251RA010.0A0A251RA01_PRUPE; Uncharacterized protein
STRINGEMJ230160.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-21B3 family protein