PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G388200.1.p
Common NamePRUPE_ppa003541mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 568aa    MW: 63256.2 Da    PI: 8.7398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G388200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1622107899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         s  l+s rl +p +f+ +++g +  s  ++l  +sg+ W+v l   +k g  ++  GW  Fv+++ ++ gDf++F++dg+ +f  +v +f+
  Prupe.1G388200.1.p  22 SADLSSERLKIPERFMIHMEGRT--SGLVSLFGPSGNAWNVDL--IQKNGDLFFHHGWPAFVRDHFVECGDFLIFRYDGELCF--TVLIFD 106
                         66788999********9998884..458***************..77778899*************************99999..999998 PP

                         S CS
                  B3  99 k 99 
                         +
  Prupe.1G388200.1.p 107 Q 107
                         6 PP
2B342.61.1e-132473271394
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         s  l +p kf  +h   ++++++l+l + +g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ +v
  Prupe.1G388200.1.p 247 SYTLNIPCKFSVAHL--PNCKVKLVLHNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVRECEFRVHV 327
                         556899****99996..45999***************9445555667999************************999996665 PP
3B347.62.9e-15456547296
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         +k++++ +   s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g  +
  Prupe.1G388200.1.p 456 VKIMKKFNICGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDVNIGDICIFELVG--K 540
                         5666555666667899*********533....3468***************5544444379999*********************998..4 PP

                         E..EEEE CS
                  B3  90 felvvkv 96 
                         +e+ v++
  Prupe.1G388200.1.p 541 REMQVHI 547
                         5556666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-2210110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-1715106No hitNo description
PROSITE profilePS5086313.66215108IPR003340B3 DNA binding domain
SMARTSM010198.3E-1217108IPR003340B3 DNA binding domain
PfamPF023625.3E-1422107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-22226327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-23228327IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-17233327No hitNo description
PROSITE profilePS5086312.661235331IPR003340B3 DNA binding domain
SMARTSM010192.0E-9235331IPR003340B3 DNA binding domain
PfamPF023622.2E-10241327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-22447548IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-22449549IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-19453547No hitNo description
PROSITE profilePS5086312.647455551IPR003340B3 DNA binding domain
PfamPF023621.2E-12455547IPR003340B3 DNA binding domain
SMARTSM010196.4E-11455553IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGRTSGLVSL FGPSGNAWNV  60
DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSEC  120
GQDSSNFEKY MGRKRGREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMC EEATCSKEIK  180
RAEKPGLDIV LCKANASIQN MCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK  240
SFNISGSYTL NIPCKFSVAH LPNCKVKLVL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA  300
FVRYNDIKLG DICIFELVRE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP  360
KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLSQSKA ASKKLVNHRK  420
KVVEDELNPG SSLRMRLTLD EERAARSFAS CFPSFVKIMK KFNICGSYTL KIPYQFSTEH  480
LPNYKTEIVL RNSKGECWTV NSVPDSKGRV VHTFCGGWMA FVRGNDVNIG DICIFELVGK  540
REMQVHISGV GKKGFDHQDG EATSNAV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.50570.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G388200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221817.10.0B3 domain-containing protein Os01g0723500
TrEMBLM5XC500.0M5XC50_PRUPE; Uncharacterized protein
STRINGEMJ230160.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-21B3 family protein