PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G388100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 136aa    MW: 15538.8 Da    PI: 4.6363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G388100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15511291599
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + +p  f+++++    +  + t++ +sg+ W v+l  ++++++ ++ kGW +Fvk++ ++  Df++F +dg sef   v++++k
  Prupe.1G388100.1.p  51 YMLIPPAFIKNFNRR--RLGKCTMRGPSGKCWAVEL--EQRQDGLFFHKGWPGFVKDHFIELEDFLIFCYDGGSEF--DVTIYDK 129
                         5899*****776544..4449***************..9**9*****************************98998..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.77337130IPR003340B3 DNA binding domain
SMARTSM010197.6E-739130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1944132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2045132IPR015300DNA-binding pseudobarrel domain
CDDcd100174.49E-1550128No hitNo description
PfamPF023621.4E-1251128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEDGGASIIQ YCEQRAFPGF NNNLVVNEAG EDVEAELLNC RYILPPQSAF YMLIPPAFIK  60
NFNRRRLGKC TMRGPSGKCW AVELEQRQDG LFFHKGWPGF VKDHFIELED FLIFCYDGGS  120
EFDVTIYDKT CCEKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G388100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021820981.14e-51B3 domain-containing protein REM5-like
TrEMBLA0A251RAQ96e-97A0A251RAQ9_PRUPE; Uncharacterized protein
STRINGEMJ253962e-56(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-14B3 family protein