PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G388000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 262aa    MW: 29349.7 Da    PI: 8.6871
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G388000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-1621104999
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         d ++++ l++p  f+++++g      + t++ ++g+ W v+l  ++++++ ++ kGW +Fvk++ +++ Df++F +dg sef   v++++k
  Prupe.1G388000.1.p  21 DDFSQH-LRIPPAFIKNFNGRR--LGKCTMRGPTGKCWAVEL--EQRRDGLFFHKGWPGFVKDHFIESEDFLIFDYDGGSEF--DVTIYDK 104
                         566666.********8887774..348***************..*********************************98998..8888876 PP
2B343.84.5e-14148236998
                         HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   9 dvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++l    l +pk+ a +      +g+   + t++l+d++grsW v+l  + +s++  v+++GW    + n++  gD+++F++++  ++  +
  Prupe.1G388000.1.p 148 HNLY--SLLIPKSIAVTEglmssEGI-LIKETIMLQDRTGRSWLVQL--DVTSDGrLVMKRGWTTCRETNQISHGDTIIFEFVK--QGVIL 231
                         3333..37999999988877665222.25679***************..7776666*************************765..66678 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         +++fr
  Prupe.1G388000.1.p 232 LHIFR 236
                         88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-2110107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2110107IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-1512103No hitNo description
SMARTSM010199.9E-1014105IPR003340B3 DNA binding domain
PfamPF023621.2E-1321103IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05527105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16134236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-17134236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857138238IPR003340B3 DNA binding domain
CDDcd100176.29E-8140236No hitNo description
SMARTSM010195.2E-9141238IPR003340B3 DNA binding domain
PfamPF023621.7E-11142237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDKKLKCPLE RPSFRVFLVG DDFSQHLRIP PAFIKNFNGR RLGKCTMRGP TGKCWAVELE  60
QRRDGLFFHK GWPGFVKDHF IESEDFLIFD YDGGSEFDVT IYDKTCCEKD VKAAAKRHAS  120
DHLAETSTGG PILFSSENAC FTKTFKPHNL YSLLIPKSIA VTEGLMSSEG ILIKETIMLQ  180
DRTGRSWLVQ LDVTSDGRLV MKRGWTTCRE TNQISHGDTI IFEFVKQGVI LLHIFRGRGE  240
GGSSSVVVLS GVLPRKSSQN P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G388000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411056.10.0B3 domain-containing protein REM5
TrEMBLA0A251R9R50.0A0A251R9R5_PRUPE; Uncharacterized protein
STRINGXP_008220725.11e-172(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-19B3 family protein