PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G381800.1.p

Common Name

PRUPE_ppa003844mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 545aa MW: 56613.1 Da PI: 8.3778

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G381800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Prupe.1G381800.1.p 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.6	4.6e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Prupe.1G381800.1.p 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.75E-7	67	90	No hit	No description
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0023	68	90	No hit	No description
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	270	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-5	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.75E-7	139	165	No hit	No description
SMART	SM00355	77	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPPKK KRNLPGMPDP EAEVIALSPT 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEIRKRVYV CPETSCVHHN 120 PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KAQTLAIDGS DGNQNLNNQS PNPNAKGVVA SPPPPPLTPS 240 NTVVSPALSI QSSELPENPI GLSPPTPATT CLTTTAISTT TTTTTTTTTS TGNCNNGSSV 300 FASIFAPSTA SALISQPPQT TSPSSFSNQV STLGRPDGST TIPTVSSINE PTSLSLSTSL 360 YLSSNGSSLF PTPEPQDHRH YAQPAVMSAT ALLQKAAQMG AAASNASLLR GFGLATSSSS 420 PSQENSTALQ WNKPESGGGT TQMAAGVGLE LLSTASAAHL TDLMMGPPSQ FGGQPMTRDL 480 LGLSIGVGNS GSSASTGGLS ALLNSFGGGG SGFDVAAAAA AAYGGGGGGA GSSQRESWEG 540 AQGR*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPPKK KRNLPGMPDP EAEVIALSPT  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEIRKRVYV CPETSCVHHN  120
PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KAQTLAIDGS DGNQNLNNQS PNPNAKGVVA SPPPPPLTPS  240
NTVVSPALSI QSSELPENPI GLSPPTPATT CLTTTAISTT TTTTTTTTTS TGNCNNGSSV  300
FASIFAPSTA SALISQPPQT TSPSSFSNQV STLGRPDGST TIPTVSSINE PTSLSLSTSL  360
YLSSNGSSLF PTPEPQDHRH YAQPAVMSAT ALLQKAAQMG AAASNASLLR GFGLATSSSS  420
PSQENSTALQ WNKPESGGGT TQMAAGVGLE LLSTASAAHL TDLMMGPPSQ FGGQPMTRDL  480
LGLSIGVGNS GSSASTGGLS ALLNSFGGGG SGFDVAAAAA AAYGGGGGGA GSSQRESWEG  540
AQGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-35	140	206	3	69	Zinc finger protein JACKDAW
5b3h_F	9e-35	140	206	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.6633	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269\|PubMed:25035403}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G381800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007225628.1	0.0	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-143	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	M5XL67	0.0	M5XL67_PRUPE; Uncharacterized protein
STRING	EMJ26827	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Prupe.1G381800.1.p
Entrez Gene	18791525

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]