PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G378800.1.p | ||||||||
Common Name | PRUPE_ppa024375mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11114.5 Da PI: 8.8841 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 5 | 51 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+WT + + +a + + ++ +W+ ar +g g++ +++k ++ + Prupe.1G378800.1.p 5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKKHYEM 51 89********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.657 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.20E-6 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.58E-13 | 6 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 100 aa Download sequence Send to blast |
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK SVEEVKKHYE MLVEDVNKIE 60 AGEVPLPNYR KPAAAAGNGK AYSNSMDIEE QRMKSLKLQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-32 | 2 | 99 | 6 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G378800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225405.1 | 8e-69 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | M5XL08 | 2e-67 | M5XL08_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26604 | 3e-68 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-38 | RAD-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G378800.1.p |
Entrez Gene | 18790229 |