PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G378000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 10872.3 Da PI: 10.0693 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.1e-09 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a + + ++ +W+ +a+ +g g++ +++k ++ Prupe.1G378000.1.p 11 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVG-GKSVEEVKRHY 54 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.44 | 7 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 11 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-4 | 11 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.12E-7 | 12 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASLSSSRNS SWTPKQNKLF EKALAVYDKD TQDRWHNVAK AVGGKSVEEV KRHYEILVQD 60 LMHIESGQVP IPNYKGTGSS GSRGIGDEQR LMKNLKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-33 | 4 | 97 | 1 | 92 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G378000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224604.2 | 3e-67 | protein RADIALIS-like 6 | ||||
Refseq | XP_008220818.1 | 3e-67 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 3e-43 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A251R9E3 | 8e-66 | A0A251R9E3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220818.1 | 1e-66 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-45 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G378000.1.p |