PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G371500.1.p
Common NamePRUPE_ppa019307mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 373aa    MW: 40034.2 Da    PI: 6.2201
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G371500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.6e-701282833153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsa 85 
                         s +++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerq+q + +++++++++        + +++kr+re+ +  + +
  Prupe.1G371500.1.p 128 SSGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSGLQQNQQQQEqqqqqlqfRGDNPKRQRES-QGGAGS 217
                         5689*************************************************9998888777765667777666777777775.777889 PP

              DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         l++ +l+s++s   le +++P+evss+avfrcvrvs++dd+++++aYqtav+igGhvfkG+LydqG++
  Prupe.1G371500.1.p 218 LACVRLPSNTSG--LELAQFPSEVSSPAVFRCVRVSAMDDADDQYAYQTAVNIGGHVFKGLLYDQGPD 283
                         999999998765..89999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00018094106IPR018247EF-Hand 1, calcium-binding site
PfamPF051422.1E-67130283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.5E-27132174IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.5E-28234282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0048467Biological Processgynoecium development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAGLFCLGGR DQAPTSSSKQ EGRGGGGGDQ ERVEGGGGNL YLYRSSNEGQ AEIYNKGFEI  60
WPSQYHHPHQ NLNYYSFGVD PSYNRRHLHN DDHDHNHNDV VSADDLSSGL RLAVMRQGGG  120
GGLGGSSSSG MNCQDCGNQA KKDCPHMRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQEQ  180
FSGLQQNQQQ QEQQQQQLQF RGDNPKRQRE SQGGAGSLAC VRLPSNTSGL ELAQFPSEVS  240
SPAVFRCVRV SAMDDADDQY AYQTAVNIGG HVFKGLLYDQ GPDGQYYPSS STGGGGESSS  300
GGRHDHQEGG GAHPHHQQHN LVTVAATAGT TSHGGNPSTT LLDPSLFPTP LNAFMAEEEE  360
GLGSGGGEDD YD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G371500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414873.10.0protein SHI RELATED SEQUENCE 5
TrEMBLA0A251R9500.0A0A251R950_PRUPE; Uncharacterized protein
STRINGEMJ230810.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-67SHI-related sequence 5