PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G371300.6.p
Common NamePRUPE_ppa026083mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21875.9 Da    PI: 10.242
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G371300.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvt+skRrng++KKA+EL vLCda v++i++s++gk++ey+s
  Prupe.1G371300.6.p  9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSNSGKIHEYIS 59
                        79***********************************************86 PP
2K-box61.92.5e-2172152281
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                         qk++g++ +++++e +q++l+kLk+ ++ L++++R++ lGe+L+++s+ eL+ +eq++e +++ iR++K +  +e+ ++l+
  Prupe.1G371300.6.p  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRRLRKQIRQRvLGECLNDMSFDELRGVEQEMEGAVEVIRKRKLRSATEMNRNLR 152
                         6788999***************************98538******************************999999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.44E-37280No hitNo description
PRINTSPR004043.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-35396IPR002100Transcription factor, MADS-box
PfamPF003199.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1282152IPR002487Transcription factor, K-box
PROSITE profilePS5129711.10784174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSN SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRR LRKQIRQRVL GECLNDMSFD  120
ELRGVEQEME GAVEVIRKRK LRSATEMNRN LREFDARDDP HYGLVKNGRE DYESAFGYSS  180
NGGPRIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15159159MEF2 CHIMERA
6byy_B5e-15159159MEF2 CHIMERA
6byy_C5e-15159159MEF2 CHIMERA
6byy_D5e-15159159MEF2 CHIMERA
6bz1_A6e-15159159MEF2 CHIMERA
6bz1_B6e-15159159MEF2 CHIMERA
6bz1_C6e-15159159MEF2 CHIMERA
6bz1_D6e-15159159MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G371300.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433680.0KM243368.1 Prunus pseudocerasus APETALA3-like protein transcript variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227134.11e-140floral homeotic protein DEFICIENS isoform X2
SwissprotE0CPH46e-84AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLM5Y2231e-138M5Y223_PRUPE; Uncharacterized protein
STRINGEMJ283331e-139(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]