PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G371300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23633 Da PI: 10.4379 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.7 | 7.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrng++KKA+EL vLCda v++i++s++gk++ey+s Prupe.1G371300.1.p 9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSNSGKIHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 76 | 9.9e-26 | 72 | 168 | 2 | 96 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKn.ellleqieelqkkekelqee 90 qk++g++ +++++e +q++l+kLk+ ++ L++++R++ lGe+L+++s+ eL+ +eq++e +++ iR++K +++ +qi++++kk +++ e Prupe.1G371300.1.p 72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRRLRKQIRQRvLGECLNDMSFDELRGVEQEMEGAVEVIRKRKViRMISNQIDTTKKKLRSATEM 162 6788999***************************98538******************************648999**************** PP K-box 91 nkaLrk 96 n++Lr+ Prupe.1G371300.1.p 163 NRNLRE 168 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.651 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.28E-36 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-35 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.0E-17 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.658 | 84 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MARGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSN SGKIHEYISP 60 STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRR LRKQIRQRVL GECLNDMSFD 120 ELRGVEQEME GAVEVIRKRK VIRMISNQID TTKKKLRSAT EMNRNLREFD ARDDPHYGLV 180 KNGREDYESA FGYSSNGGPR IFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 7e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 7e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 7e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G371300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM243368 | 0.0 | KM243368.1 Prunus pseudocerasus APETALA3-like protein transcript variant 1 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415740.1 | 1e-149 | floral homeotic protein DEFICIENS isoform X1 | ||||
Refseq | XP_020415744.1 | 1e-149 | floral homeotic protein DEFICIENS isoform X1 | ||||
Swissprot | P23706 | 2e-92 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A251R930 | 1e-150 | A0A251R930_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221326.1 | 1e-138 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-80 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G371300.1.p |
Publications ? help Back to Top | |||
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