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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.1G369400.1.p |
| Common Name | PRUPE_ppa008316mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 338aa MW: 37811.8 Da PI: 9.7597 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.1G369400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 395.9 | 5.8e-121 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd+g+re r k+ +y+ a + l +++ +q+m+++ erda+i+ernla+sekkaa++erdmaflqrd+a+aern a++erdn++++l
Prupe.1G369400.1.p 1 MDDSGHREngRIKAeQYKAAqgQWLMQHQpsMKQIMAIMGERDAAIQERNLAFSEKKAALQERDMAFLQRDAAIAERNTAIMERDNAIANL 91
9*****999999999999444433443431135********************************************************** PP
GAGA_bind 85 llvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
+++ensl+ s++p+g+q+++g+k++++ qq +++ p++++ ++++r+++++++ p+ a+ +++ +++k+p+e+k+ +++k
Prupe.1G369400.1.p 92 QYRENSLNngnvSSCPPGCQISRGVKHMHHPQQhVHHpPHMNEASYGTRDMHTSDSVPMPPDASLPTKS------RQPKRPREPKTMAPNK 176
******9999999********************555589*************99999966544444433......4566778888888888 PP
GAGA_bind 170 ksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
k++ks +kvk+es+d + sk+++k++dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWq
Prupe.1G369400.1.p 177 KTSKSPRKVKRESEDLNkmtfdklhewkgsqdmggggddvnkhlvvSKSDWKCQDLGLNQVAYDESTMPAPVCSCTGILRQCYKWGNGGWQ 267
88888888888888744488888999***************************************************************** PP
GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
S+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
Prupe.1G369400.1.p 268 SSCCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 337
*********************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MDDSGHRENG RIKAEQYKAA QGQWLMQHQP SMKQIMAIMG ERDAAIQERN LAFSEKKAAL 60
QERDMAFLQR DAAIAERNTA IMERDNAIAN LQYRENSLNN GNVSSCPPGC QISRGVKHMH 120
HPQQHVHHPP HMNEASYGTR DMHTSDSVPM PPDASLPTKS RQPKRPREPK TMAPNKKTSK 180
SPRKVKRESE DLNKMTFDKL HEWKGSQDMG GGGDDVNKHL VVSKSDWKCQ DLGLNQVAYD 240
ESTMPAPVCS CTGILRQCYK WGNGGWQSSC CTTTMSMYPL PAVPNKRHAR VGGRKMSGSA 300
FNKLLSRLAA EGHDLSNPVD LKDNWAKHGT NRYITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
