PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G366800.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 432aa    MW: 48233 Da    PI: 6.3264
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G366800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.96e-27158222170
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                         r+++sL+llt+kf++l++++++++++ln+ a+ L   +v  ++RRiYDi+NVLe++nliek++kn+irwk
  Prupe.1G366800.4.p 158 RYDSSLGLLTKKFVSLIQEAKDRTLDLNKTAEVL---EV--QKRRIYDITNVLEGINLIEKTSKNHIRWK 222
                         6899******************************...99..****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-27157222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-33158223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-17158221IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-24160222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.57E-31234343No hitNo description
SuperFamilySSF1440749.68E-22235342No hitNo description
PfamPF164212.0E-22240340IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEMEDPNRLL RPSQFEFQLL HSHSQTQNHQ NHPSYLLPSL PSSQRLLPHS FPAFAPSIDS  60
GHHCLSDSAF ASHADAHYAF AKLALRPKKE IDDVAQIGGH EAAAGPSKAL QDPSLSVPQS  120
CTGRKHNPKS KVPKHTKAGT QRSTADSHNG LNPAIGCRYD SSLGLLTKKF VSLIQEAKDR  180
TLDLNKTAEV LEVQKRRIYD ITNVLEGINL IEKTSKNHIR WKCYDGSTPG ELDDQVSRIQ  240
DEVESLYAEE CRLDDAIREK LELLRALEED EKNKKFLFLT EEDILSPCCF QNQTLIAIKA  300
PQASCIEVID PDDEEDTCFP QKQFRMIVRS TIGPIHLYLL SKYQGQRENI AVKQAKSMGS  360
SSWNSSDYSR VEGGGLSSYH QGNKKDSSEI LSLPGSEASS GIQKIIPSHV NVNDDYWFRS  420
EHEVSLTDLW G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22153222272PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G366800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416737.10.0transcription factor E2FC isoform X1
TrEMBLA0A251R8P20.0A0A251R8P2_PRUPE; Uncharacterized protein
TrEMBLA0A251R8V70.0A0A251R8V7_PRUPE; Uncharacterized protein
STRINGXP_008221406.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.22e-83E2F/DP family protein