PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G340500.1.p | ||||||||
Common Name | PRUPE_ppa021540mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 302aa MW: 33632.3 Da PI: 8.7245 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 20 | 73 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++ +e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Prupe.1G340500.1.p 20 PRLRWTPELHHCFLHSIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.12 | 16 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-30 | 16 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-15 | 18 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 20 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MTSCSARNGA VRQYVRSKVP RLRWTPELHH CFLHSIERLG GHKKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMRGDLGT RQQVTDRSCT QPRKQLFEEH DDGCLDELNG VSFYPSSKSI 120 RESDSQLIYS TPRRSKRART ETTSSISEGL QQQCSQGIYE TVSNPYSFDD NVLAMAQQQR 180 GGFKEPNPSA LSLPQPHLHY NFNHPSSQFS LQESDFFKVT KPEARADADQ DNEDGDCQLS 240 LSLSLHHPSS HKSKSNASSS EFSGAISSYS SSRSNYKDCS TSSSGNHRSI NLNLSIALCG 300 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G340500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020410534.1 | 0.0 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
TrEMBL | A0A251R7F6 | 0.0 | A0A251R7F6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220974.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 3e-31 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G340500.1.p |
Entrez Gene | 18792327 |