PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G338700.1.p
Common NamePRUPE_ppa005331mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 467aa    MW: 51966.9 Da    PI: 8.274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G338700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-065880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Prupe.1G338700.1.p 58 YVCEICNQGFQRDQNLQMHRRRH 80
                        9*********************9 PP
2zf-C2H215.45.5e-05138160123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k +  +s++k H++t+
  Prupe.1G338700.1.p 138 WVCDKCSKGYAVQSDYKAHLKTC 160
                         58*******************98 PP
3zf-C2H210.90.0015168186523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr +++  H+ t+
  Prupe.1G338700.1.p 168 DCGRVFSRVESFIEHQDTC 186
                         9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-55780No hitNo description
PROSITE profilePS5015710.975880IPR007087Zinc finger, C2H2
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PROSITE patternPS01359060143IPR019786Zinc finger, PHD-type, conserved site
SMARTSM00355210102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.0E-4129159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-5133158No hitNo description
SMARTSM0035565138165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLDNHTASSS AAPSSSSHDA LENGGATHKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE IAQDQVIKKR VFVCPEPSCL HHDPCHALGD  120
LVGIKKHFRR KHSNHKQWVC DKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI  180
EHQDTCTVRH VVRPEFQAAL QPACSSRTAS STSPSSDTNF SINNNNNNNV PQVLPGFPLR  240
PNPTHHHDHQ REHALNNPHS SCNQQQQQQQ VRNNILELQL LPSSNTHTTS PPNLDEKHAT  300
HLKLSIGSSS CDQRGDEKND QTSQPSSSGI RRSSSNAEKM DGAGPTLEVA RLKEFASEEL  360
KLAMAEKAYA EDARREAKRQ IEMAELEFTN AKRMRQQALA ELEKAQFLKE QAMKKISSAI  420
LQITCQACKQ HFHASATTAV GPSDETSLAM SYMSSATTEG EGDHDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17136186555Zinc finger protein JACKDAW
5b3h_F2e-17136186555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G338700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225733.10.0protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-163IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLM5XLH00.0M5XLH0_PRUPE; Uncharacterized protein
STRINGEMJ269320.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-155C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]