PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G311000.1.p | ||||||||
Common Name | PRUPE_ppa011233mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23361.6 Da PI: 8.77 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.7 | 3.3e-27 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p + p++q++++ +++k++G++ +l+l++a +++ r+++++sl+yeA+ r+ +P G+vg+++++++ Prupe.1G311000.1.p 4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGSQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWA 94 6****************************************************************************************** PP DUF260 87 leqlkaelallkee 100 +q++++++l++++ Prupe.1G311000.1.p 95 QCQAAVDAVLAGSP 108 ******99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.161 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-21 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGSQH 60 LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIA GLDADALNLI 120 PSPPNKSGDI RHVFRDSNSG ASRNKVTTRN RFKRSMNRTK THPGSLTEFA TGSHMAQFCN 180 FPDPEDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G311000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007223396.1 | 1e-162 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 5e-68 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M5XZ87 | 1e-160 | M5XZ87_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24595 | 1e-161 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-69 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G311000.1.p |
Entrez Gene | 18788644 |