PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G310900.1.p
Common NamePRUPE_ppa005713mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 448aa    MW: 49553.8 Da    PI: 4.8381
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G310900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-091660341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v 
  Prupe.1G310900.1.p 16 ARACDSCIRKRARWYCAADDAFLCQACDSSVHSAnqlarrHERVL 60
                        578*****************************6578888898875 PP
2CCT67.92.6e-23392435144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Prupe.1G310900.1.p 392 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 435
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791461IPR000315B-box-type zinc finger
PfamPF006438.9E-81660IPR000315B-box-type zinc finger
CDDcd000218.25E-101761No hitNo description
PfamPF062037.6E-18392434IPR010402CCT domain
PROSITE profilePS5101716.083392434IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSNKKVANA VGAKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN QLARRHERVL  60
LKTASSVKPT DKDDQVSVSD NPAAPSWHGG FTRKARTPRQ GKHKSQEGAR NRFPQVPEVG  120
ADDSNSYDEE NEEDQQQLLY RVPVFDPFVA EMCTATTSAN SNEEAVANTC DVSKVSSSSP  180
NYNHNGRDGF LLPSDMDLAE FAADVDSMLG RGLEDDECFG MEGLGLMDSK ENESNCRVKL  240
EDEEEEEEEE GGTGGVNFMG CELGETPEID MMREPFVLNF EDYDDSPQSC GEQDDKLGVG  300
MMDTTYSGDH QQHEEVHTGA SKSGKKKEIF LRLDYEAVIT AWDGSPWTSG GRPDFSSECL  360
PDCMGVCGTE LHYPYGDLNG LGVHPAMADG GREARVSRYR EKRRTRLFSK KIRYEVRKLN  420
AEKRPRMKGR FVKRASFAGS AFPVLTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402418RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G310900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222133.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLM5XB520.0M5XB52_PRUPE; Uncharacterized protein
STRINGEMJ233320.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-85B-box type zinc finger protein with CCT domain