PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G290600.1.p
Common NameMADS1, PRUPE_ppa010723mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27794.7 Da    PI: 8.2734
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G290600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl ey++
  Prupe.1G290600.1.p  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALVVFSNKGKLCEYAT 59
                        79***********************************************86 PP
2K-box103.33e-34781744100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ ++ + + + +++ e+++Lk+++e Lqr+qRh+lGedL+sL+lke+q+Le+qLe++lk+iRs+Kn+l++e+i+elq+ke+++qe+n+ L
  Prupe.1G290600.1.p  78 RQLVEPDIESQCNWTFEYSRLKAKVELLQRNQRHYLGEDLDSLTLKEIQSLEHQLETALKQIRSRKNQLMHESISELQRKERAMQEQNNLL 168
                         5555655666789****************************************************************************** PP

               K-box  95 rkklee 100
                          kk++e
  Prupe.1G290600.1.p 169 AKKIKE 174
                         ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.483161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.47E-40279No hitNo description
SuperFamilySSF554553.14E-34292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-3086172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.92588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALVVFSN KGKLCEYATD  60
SCMDQILDRY ERYSYAERQL VEPDIESQCN WTFEYSRLKA KVELLQRNQR HYLGEDLDSL  120
TLKEIQSLEH QLETALKQIR SRKNQLMHES ISELQRKERA MQEQNNLLAK KIKEKEKAAA  180
EEVHNWEQQN NGLNLLPQPL PCLNMGGTQQ DEFLQVRRNQ LDLTLEPLYS CNLGCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-21185184MEF2 CHIMERA
6byy_B9e-21185184MEF2 CHIMERA
6byy_C9e-21185184MEF2 CHIMERA
6byy_D9e-21185184MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G290600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0793770.0EU079377.1 Prunus persica APETALA1-like protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223821.11e-176truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-136AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA7XFW01e-175A7XFW0_PRUPE; APETALA1-like protein
STRINGEMJ250201e-175(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-105MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Zhang L,Xu Y,Ma R
    Molecular cloning, identification, and chromosomal localization of two MADS box genes in peach (Prunus persica).
    J Genet Genomics, 2008. 35(6): p. 365-72
    [PMID:18571125]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]