PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G290500.1.p
Common NamePRUPE_ppa1027139mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28539.1 Da    PI: 8.2228
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G290500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+n+qvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Prupe.1G290500.1.p  9 KRIENKINQQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59
                        79***********************************************96 PP
2K-box92.76.5e-31821739100
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         + +++++s +q++ +Lk+++e Lqr+qR++lGedL+ L  keLqqLe+qL+ sl++iRs+K+++++ qi++l +ke++l e+n++Lr+kle
  Prupe.1G290500.1.p  82 QPAQDSQSRYQDYLNLKAKVEVLQRTQRNFLGEDLGHLGTKELQQLENQLDMSLRQIRSTKTQVMHGQISDLLRKEQMLLEANHELRRKLE 172
                         5678899**********************************************************************************98 PP

               K-box 100 e 100
                         e
  Prupe.1G290500.1.p 173 E 173
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.492161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-33282IPR002100Transcription factor, MADS-box
CDDcd002656.56E-45278No hitNo description
PRINTSPR004043.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.66287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKVELKR IENKINQQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCSG  60
SSMEKTLERY QRCSYSALEA SQPAQDSQSR YQDYLNLKAK VEVLQRTQRN FLGEDLGHLG  120
TKELQQLENQ LDMSLRQIRS TKTQVMHGQI SDLLRKEQML LEANHELRRK LEECDATIER  180
YSRTTKEQNQ NVPNSSHHQA AQFEGVLDHS QCNNTLQIGY NPPEVTDHHG LQSSTQSHSG  240
LFVPGTWVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-23751711101Developmental protein SEPALLATA 3
4ox0_B1e-23751711101Developmental protein SEPALLATA 3
4ox0_C1e-23751711101Developmental protein SEPALLATA 3
4ox0_D1e-23751711101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G290500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221848.10.0MADS-box protein CMB1
SwissprotQ8LLR25e-98MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM5XAC70.0M5XAC7_PRUPE; MADS-box protein 16
STRINGEMJ230470.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]