PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G290200.6.p
Common NamePRUPE_ppa017695mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 500aa    MW: 55061.4 Da    PI: 7.1801
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G290200.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.4e-42163239177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cqv gC++dls+ k+yh+rh+vC++hsk+p v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hnerrrk+q
  Prupe.1G290200.6.p 163 TCQVLGCNMDLSSSKDYHKRHRVCDAHSKTPIVIVNGMEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNERRRKPQ 239
                         6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-33159225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.547161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-39162243IPR004333Transcription factor, SBP-box
PfamPF031104.7E-32164237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MESWSFGSEG KGFLFPEEID IQIDAFARSR KALLEWDNKT CLNFGKESVD GTEFMELDLP  60
DIVRKPFHTN QGVEILSGVV GNDSSYNSVA SPTCLISSSS SLGEGESGSK FSSPVTESNS  120
QDSSLIALKL GRLTDSKNGQ NGQHAKERSK RGGIKGSYSH IPTCQVLGCN MDLSSSKDYH  180
KRHRVCDAHS KTPIVIVNGM EQRFCQQCSR FHLLAEFDDV KRSCRRRLAG HNERRRKPQL  240
DTLNCKPHKL LRSYQGTGYV GTSFAKRTPF VFSDILPGGI LYPEEYAHAN QYGNVKCEDE  300
STYSQCVTPI ANRQMLPKSV LGKQHAPGIP SSGNEYSTFD AASTIQKASG SSNSCCALSL  360
LSTQSHNLSG HSAGVQVPSP SIIQQSTHHS VGQLYEKPSR VNSMEKCGQS GSYLHIMNSM  420
GVDQMESVID SSQAVDFQLH TDGGFQESHC LSTKYCLSPE HGTTFDLLQL SSHLQRVEHE  480
RNFLQVKQEH GEYYCFPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-28161237884squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G290200.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226822.10.0squamosa promoter-binding-like protein 6
RefseqXP_020411209.10.0squamosa promoter-binding-like protein 6
TrEMBLM5XR560.0M5XR56_PRUPE; Uncharacterized protein
STRINGEMJ280210.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-51SBP family protein