PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G290200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 534aa MW: 58584.7 Da PI: 7.5408 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 6e-42 | 197 | 273 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rh+vC++hsk+p v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hnerrrk+q Prupe.1G290200.1.p 197 TCQVLGCNMDLSSSKDYHKRHRVCDAHSKTPIVIVNGMEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNERRRKPQ 273 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-33 | 193 | 259 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.547 | 195 | 272 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-39 | 196 | 277 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-32 | 198 | 271 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MLTLSHSVSA STSPKPENKI LPLSLSPCLC LSHSLRAFIV SSEGKGFLFP EEIDIQIDAF 60 ARSRKALLEW DNKTCLNFGK ESVDGTEFME LDLPDIVRKP FHTNQGVEIL SGVVGNDSSY 120 NSVASPTCLI SSSSSLGEGE SGSKFSSPVT ESNSQDSSLI ALKLGRLTDS KNGQNGQHAK 180 ERSKRGGIKG SYSHIPTCQV LGCNMDLSSS KDYHKRHRVC DAHSKTPIVI VNGMEQRFCQ 240 QCSRFHLLAE FDDVKRSCRR RLAGHNERRR KPQLDTLNCK PHKLLRSYQG TGYVGTSFAK 300 RTPFVFSDIL PGGILYPEEY AHANQYGNVK CEDESTYSQC VTPIANRQML PKSVLGKQHA 360 PGIPSSGNEY STFDAASTIQ KASGSSNSCC ALSLLSTQSH NLSGHSAGVQ VPSPSIIQQS 420 THHSVGQLYE KPSRVNSMEK CGQSGSYLHI MNSMGVDQME SVIDSSQAVD FQLHTDGGFQ 480 ESHCLSTKYC LSPEHGTTFD LLQLSSHLQR VEHERNFLQV KQEHGEYYCF PTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-28 | 193 | 271 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G290200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226822.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_020411209.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A251R4W0 | 0.0 | A0A251R4W0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28021 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 8e-51 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G290200.1.p |