PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G283800.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 557aa MW: 62346.2 Da PI: 4.2302

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G283800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.7e-07	262	309	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 rW++eE+e ++++v + Wk + ++ R++ +++s+++++ Prupe.1G283800.1.p 262 RWSEEEEETFLEVVYSNPASvgrnFWKQLSVVFP-SRSRRELVSYYFNV 309 9***********9999889999******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0027	259	312	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.33	262	310	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MGFKRPFDDV DFQELPFKHP RQLEFSDKLA PFSDAVSCYG APRKTYVSDE DGNVVGKSQW 60 LEVLEKYTVN ENSTPVNKVI GAPFSLTTRS CREEDVGPGP DAYSPPAGDF ELDFPRRTFV 120 PFKDVYSSLA DRFPRKPVPV GPDHQARIPT WTGRVKCLDQ TDESNLNRFS LHSLESEKVV 180 NNASEENLLG TSVIPMPDSN LSALKCDKVG LGRTDCSCLD PGTVRCVQKH VMDAREELRR 240 TLGNEKFVKL GFCDMGEEVA RRWSEEEEET FLEVVYSNPA SVGRNFWKQL SVVFPSRSRR 300 ELVSYYFNVF MLRRRAVQNR SNILEIDSDD DEWHGDNGGS IDRRVAEYDE DSVIESRVYQ 360 DDHVDHEEDY SDEDDSDDDD VDDDGSDGDG DGDGGHVKGD SSEEDGGIDN MESYMLKTVD 420 DGKFDTVGQH GEKTSGCTRE EFDFQDDSCV SFEFQSNMHD SCDRIDAGAA GSALQVTGFR 480 NDRSKCLHGQ PDASSDVVGH AYLLEPCDAK VWDARFPLDA MKGVDVLPTW SMIEEIFDEG 540 MGDYKTRDEQ KGPASG*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MGFKRPFDDV DFQELPFKHP RQLEFSDKLA PFSDAVSCYG APRKTYVSDE DGNVVGKSQW  60
LEVLEKYTVN ENSTPVNKVI GAPFSLTTRS CREEDVGPGP DAYSPPAGDF ELDFPRRTFV  120
PFKDVYSSLA DRFPRKPVPV GPDHQARIPT WTGRVKCLDQ TDESNLNRFS LHSLESEKVV  180
NNASEENLLG TSVIPMPDSN LSALKCDKVG LGRTDCSCLD PGTVRCVQKH VMDAREELRR  240
TLGNEKFVKL GFCDMGEEVA RRWSEEEEET FLEVVYSNPA SVGRNFWKQL SVVFPSRSRR  300
ELVSYYFNVF MLRRRAVQNR SNILEIDSDD DEWHGDNGGS IDRRVAEYDE DSVIESRVYQ  360
DDHVDHEEDY SDEDDSDDDD VDDDGSDGDG DGDGGHVKGD SSEEDGGIDN MESYMLKTVD  420
DGKFDTVGQH GEKTSGCTRE EFDFQDDSCV SFEFQSNMHD SCDRIDAGAA GSALQVTGFR  480
NDRSKCLHGQ PDASSDVVGH AYLLEPCDAK VWDARFPLDA MKGVDVLPTW SMIEEIFDEG  540
MGDYKTRDEQ KGPASG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G283800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410176.1	0.0	uncharacterized protein LOC18792905
TrEMBL	A0A251R4K6	0.0	A0A251R4K6_PRUPE; Uncharacterized protein
STRING	XP_008221522.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2153	8	10

Link Out ? help Back to Top
Phytozome	Prupe.1G283800.1.p