PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G275900.1.p

Common Name

PRUPE_ppa006561mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 347aa MW: 38907.9 Da PI: 7.645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G275900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Prupe.1G275900.1.p 21 KPRLKWTPELHQRFVEAVTQLGGADKATPKSLMRVMGIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.746	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-31	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	119	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGLLQNMQNQ NMNLVLSTDA KPRLKWTPEL HQRFVEAVTQ LGGADKATPK SLMRVMGIHG 60 LTLYHLKSHL QKYRLGKSQQ SENCTDIKQE DYKEIQSSDD HFDTDISDET HCQINESLQI 120 AESLQLQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQTVLK KAQETLSGYG SSSVGVELAK 180 AELTQLVSMV NNGCPSSSFS ELTETGTSSL KYVERKQMRG SMESSLTSSE SSGRKEEKQP 240 MHKHGGDPEK SNTTCVELPL MDIHPENKPW NNVTNSHVIG RKRSSSPISD GICVEQPISK 300 RTPTQRDKSG QHLRKSGLLD TIDLNRKYQN DIDSGPKVID LNCKGI*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGLLQNMQNQ NMNLVLSTDA KPRLKWTPEL HQRFVEAVTQ LGGADKATPK SLMRVMGIHG  60
LTLYHLKSHL QKYRLGKSQQ SENCTDIKQE DYKEIQSSDD HFDTDISDET HCQINESLQI  120
AESLQLQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQTVLK KAQETLSGYG SSSVGVELAK  180
AELTQLVSMV NNGCPSSSFS ELTETGTSSL KYVERKQMRG SMESSLTSSE SSGRKEEKQP  240
MHKHGGDPEK SNTTCVELPL MDIHPENKPW NNVTNSHVIG RKRSSSPISD GICVEQPISK  300
RTPTQRDKSG QHLRKSGLLD TIDLNRKYQN DIDSGPKVID LNCKGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G275900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410650.1	0.0	myb family transcription factor PHL8
Swissprot	F4I274	4e-87	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A251R493	0.0	A0A251R493_PRUPE; Uncharacterized protein
STRING	XP_008221605.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-86	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G275900.1.p
Entrez Gene	18789341

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]