PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G268800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 434aa    MW: 48697.4 Da    PI: 9.279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G268800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-1279135155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Prupe.1G268800.1.p  79 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 135
                         789******************88887786625555.********************98 PP
2AP245.22.4e-14178237155
                 AP2   1 sgykGV........rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV        ++++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  Prupe.1G268800.1.p 178 SKYRGVarlnccgnCRHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 237
                         6788888888888888999*******99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-1779144No hitNo description
PfamPF008472.7E-879135IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1479144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1180143IPR001471AP2/ERF domain
PROSITE profilePS5103218.00480143IPR001471AP2/ERF domain
SMARTSM003801.2E-1780149IPR001471AP2/ERF domain
PRINTSPR003673.3E-58192IPR001471AP2/ERF domain
CDDcd000184.09E-23178247No hitNo description
SMARTSM003802.0E-22179251IPR001471AP2/ERF domain
PROSITE profilePS5103217.833179245IPR001471AP2/ERF domain
PfamPF008475.3E-10179237IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-15190247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-15193246IPR001471AP2/ERF domain
PRINTSPR003673.3E-5227247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDHLTSVKSE LSQGRRPLCI IEVDALVNKC VKRRRRDSSA VVAPAGCSDQ QQGDQRPQQQ  60
AQQAGQSTVA TTTTVKRSSR FRGVSRHRWT GRYEAHLWDK GSWNPTQRKK GKQGAYDEEE  120
SAARAYDLAA LKYWGTSTFT NFPVPDYENE IEIMNTLSKE EYLASLRRRS SGFSRGVSKY  180
RGVARLNCCG NCRHHHNGRW EARIGRVFGN KYLYLGTYGT QEEAAHAYDI AAIEYRGINA  240
VTNFDLSTYI RWLRPGANSL GSQEPKLNTE SLPMPASSNS IPSKEGKQMS MFQPNSFPVD  300
DIDTSRNRDI FQRQQKQPMP ISPCTKSSSS PTALGLLLQS SIFKELVEKN LNGHNEESEK  360
NDIRNLLPVQ TNSDNLKRIL YNGMHNNPFT CPSNTSVLPA LESQEESILP LCNSRGQSIW  420
NGAINMFSSP DFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G268800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535483e-62AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021807394.10.0AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A251R3Z90.0A0A251R3Z9_PRUPE; Uncharacterized protein
STRINGXP_008221746.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-71AP2 family protein