PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G267300.3.p
Common NamePRUPE_ppa018002mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31402.6 Da    PI: 4.4495
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G267300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-193993357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  Prupe.1G267300.3.p 39 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 93
                        56689***********************************************995 PP
2HD-ZIP_I/II127.65.3e-4139130293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e++
  Prupe.1G267300.3.p  39 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEID 129
                         9**************************************************************************************9987 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.1G267300.3.p 130 S 130
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-192696IPR009057Homeodomain-like
PROSITE profilePS5007117.3133494IPR001356Homeobox domain
SMARTSM003896.3E-183698IPR001356Homeobox domain
CDDcd000866.32E-183795No hitNo description
PfamPF000461.7E-163992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-2041102IPR009057Homeodomain-like
PRINTSPR000311.6E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000311.6E-67490IPR000047Helix-turn-helix motif
PfamPF021831.1E-1694135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVHFESASGE DSLDRSFFRP IDKENGDDDY DASLNQPGKK RRLTVDQVQF LEKNFEVENK  60
LEPERKAQLA KELGLQPRQV AIWFQNRRAR FKNKQLEKEY DSLKASFDKL KADHDNLLKE  120
NGSLKNEIDS LKDMLILKDK GKPGKRNLEL HDANNIISSD VNPQSATPNA AASDNVPMVV  180
CKQEDASSAK SDVFDSDSPH CTENHSSLLE PADSSHVFEP AEQSDFSQDE DDDLSRTLLP  240
PPYLKLEDSC YDEPPASSNN FVFPMEDQQP FCFWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G267300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225072.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A251R3Q50.0A0A251R3Q5_PRUPE; Uncharacterized protein
STRINGEMJ262710.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-40HD-ZIP family protein