PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G267300.2.p
Common NamePRUPE_ppa018002mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31879.1 Da    PI: 4.4495
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G267300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-194498357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  Prupe.1G267300.2.p 44 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 98
                        56689***********************************************995 PP
2HD-ZIP_I/II127.55.5e-4144135293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e++
  Prupe.1G267300.2.p  44 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEID 134
                         9**************************************************************************************9987 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.1G267300.2.p 135 S 135
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1931101IPR009057Homeodomain-like
PROSITE profilePS5007117.3133999IPR001356Homeobox domain
SMARTSM003896.3E-1841103IPR001356Homeobox domain
CDDcd000864.97E-1842100No hitNo description
PfamPF000461.8E-164497IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-2046107IPR009057Homeodomain-like
PRINTSPR000311.6E-67079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000311.6E-67995IPR000047Helix-turn-helix motif
PfamPF021831.1E-1699140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGSNSMVHFE SASGEDSLDR SFFRPIDKEN GDDDYDASLN QPGKKRRLTV DQVQFLEKNF  60
EVENKLEPER KAQLAKELGL QPRQVAIWFQ NRRARFKNKQ LEKEYDSLKA SFDKLKADHD  120
NLLKENGSLK NEIDSLKDML ILKDKGKPGK RNLELHDANN IISSDVNPQS ATPNAAASDN  180
VPMVVCKQED ASSAKSDVFD SDSPHCTENH SSLLEPADSS HVFEPAEQSD FSQDEDDDLS  240
RTLLPPPYLK LEDSCYDEPP ASSNNFVFPM EDQQPFCFWP Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G267300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225072.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A251R3Q50.0A0A251R3Q5_PRUPE; Uncharacterized protein
STRINGEMJ262710.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1