PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G238200.5.p | ||||||||
Common Name | PRUPE_ppa002679mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 566aa MW: 63342.6 Da PI: 6.3833 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.2 | 4.4e-24 | 148 | 201 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Prupe.1G238200.5.p 148 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 201 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.855 | 1 | 82 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 1.05E-12 | 16 | 88 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.7E-7 | 16 | 44 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 2.3E-10 | 45 | 89 | No hit | No description |
SuperFamily | SSF46689 | 3.85E-17 | 146 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 146 | 206 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-21 | 148 | 201 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-8 | 150 | 200 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVMSVDGET SRVMKGVQHG 60 ACDYLLKPIR MKELRNIWQH VFRKKIHEIR DIESHESIEG IQLIRNGSDQ YDEGYFFSAE 120 DLTSSRKRKD VDNKYDDKDF SDCSSAKKAR VVWSVDLHQK FVKAVHQIGF DKVGPKKILD 180 LMNVPWLTRE NVASHLQKYR LYLSRLQKEN DIKSSFGGTK HSDYSSKDLQ GILSVQNSIN 240 IQQNDVAHGS YRFSGNNLVA QNADPKSNEG DIKGIVSEPV AEPKKGTTGN IPDSQKTRSS 300 QMDFNSSYAE TQKGLVGNVP DSQKIRSSQM RVNHSFASVE SEVNLTAFDS TIPATYSWNK 360 IQLEKEHKPL IQLNNGFSKP QLPGPQHHFQ ADQLQSIPSI SSRPSIPGGD VTGSSKSKPS 420 YSEYTNHHGS HVSPTISPTI SATDSFPGQT KSCVVDHQLS ETISTSTSNM KNQGINLSTD 480 LESAQRNLIL GSTSPFASLD DEFQICWYQG DCYGMNLELQ NVEFSEYTDP THVTEVPAHL 540 YDALRFEYPC DPSEYSVLDQ GLFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-17 | 144 | 206 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G238200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409742.1 | 0.0 | two-component response regulator ARR11 | ||||
TrEMBL | A0A251R3E3 | 0.0 | A0A251R3E3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28155 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 3e-90 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G238200.5.p |
Entrez Gene | 18789818 |