PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G238200.2.p | ||||||||
Common Name | PRUPE_ppa002679mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARR-B | ||||||||
Protein Properties | Length: 617aa MW: 69017.2 Da PI: 5.997 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76 | 4.9e-24 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Prupe.1G238200.2.p 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81.4 | 3e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ +++l+++l+k y ev+++ +++al+ll+ek+ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + Prupe.1G238200.2.p 19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLREKKdgYDIVVSDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 107 89*********************.***************999999**********************6644.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ++el++ Prupe.1G238200.2.p 108 VQHGACDYLLKPIRMKELRN 127 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.2E-148 | 1 | 587 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 6.4E-35 | 16 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.8E-44 | 16 | 141 | No hit | No description |
SMART | SM00448 | 2.5E-32 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.134 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.5E-24 | 19 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.92E-30 | 20 | 133 | No hit | No description |
SuperFamily | SSF46689 | 4.39E-17 | 197 | 256 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 197 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-21 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-8 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALNLLREKK 60 DGYDIVVSDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI 120 RMKELRNIWQ HVFRKKIHEI RDIESHESIE GIQLIRNGSD QYDEGYFFSA EDLTSSRKRK 180 DVDNKYDDKD FSDCSSAKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR 240 ENVASHLQKY RLYLSRLQKE NDIKSSFGGT KHSDYSSKDL QGILSVQNSI NIQQNDVAHG 300 SYRFSGNNLV AQNADPKSNE GDIKGIVSEP VAEPKKGTTG NIPDSQKTRS SQMDFNSSYA 360 ETQKGLVGNV PDSQKIRSSQ MRVNHSFASV ESEVNLTAFD STIPATYSWN KIQLEKEHKP 420 LIQLNNGFSK PQLPGPQHHF QADQLQSIPS ISSRPSIPGG DVTGSSKSKP SYSEYTNHHG 480 SHVSPTISPT ISATDSFPGQ TKSCVVDHQL SETISTSTSN MKNQGINLST DLESAQRNLI 540 LGSTSPFASL DDEFQICWYQ GDCYGMNLEL QNVEFSEYTD PTHVTEVPAH LYDALRFEYP 600 CDPSEYSVLD QGLFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-17 | 195 | 257 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G238200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409742.1 | 0.0 | two-component response regulator ARR11 | ||||
TrEMBL | A0A251R2A3 | 0.0 | A0A251R2A3_PRUPE; Two-component response regulator | ||||
STRING | XP_008221977.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-137 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G238200.2.p |
Entrez Gene | 18789818 |