PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G237500.1.p

Common Name

PRUPE_ppa026722mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 516aa MW: 57213.2 Da PI: 6.5073

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G237500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.7	1.3e-111	146	515	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPi 90 lv++L++cAeav+ +d++ a++lL +l+ +a g+++qR+a++f+++L+ rla ++ + + + p ++s+ s+e+ al+l +e++P Prupe.1G237500.1.p 146 LVQQLIACAEAVACRDKAHASTLLYELRANAKVFGTSFQRVASCFVQGLSDRLALIQPlGAVGLIGPITKSTAFSAEKDEALHLVYEICPQ 236 689*************************************************9444145555566666666799999******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ++f+h++aN Ilea+ege+ vH+iD++++ +G QW +L+++La+R+ ++ ++lRiTgvg+ s+e+l+++g+ L+ A++++++f Prupe.1G237500.1.p 237 IQFGHFVANASILEAFEGESSVHVIDLGMTlglpHGYQWRNLIDSLANRAgQPLHRLRITGVGN----SAERLQAIGNDLKLHAQSMKLNF 323 **********************98763344788*********455569****....9****************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ef++ v++++e+l+++++++ g++l+Vn++lqlh l++es + +vL+++ +lsPk++++veq+++hn++ Fl rf+eal+ ysa+ Prupe.1G237500.1.p 324 EFSA-VESSFENLKPQDFNLVDGDVLVVNSILQLHCLVKESRGALN---SVLQTLHQLSPKLMILVEQDTSHNGPFFLGRFMEALHNYSAI 410 .799**************************88877777...8************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 fdsl+a lp+ + r+k+E++++g+ei+n+v+ceg +r+erhe++e+Wr+r+++aGF+p+pl+ +qa l+ +gy+v e++g+l Prupe.1G237500.1.p 411 FDSLDAMLPKYDTRRAKMEQFYFGEEIKNIVSCEGPARVERHERVEQWRRRMRRAGFQPAPLKMI--AQAMKWLEINTCEGYTVVEDKGCL 499 **********************************************************865..5777777777778******* PP GRAS 359 vlgWkdrpLvsvSaWr 374 v+gWk++p++++S+W+ Prupe.1G237500.1.p 500 VFGWKSKPIIATSCWK 515 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.248	120	497	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-109	146	515	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MASGLYVQAE FSGDNTSDEV IGLDLNLSSM ACLPYPSSLS TLEENPAAWV IPFIDETSSH 60 KRLKQQHSSS YEFNNAGTNY CSLYSGSGSM CARGLDSLPR IHFRDHISAY TRRYLAVEAM 120 EEATATLMRG KEGESEEGGR GDATKLVQQL IACAEAVACR DKAHASTLLY ELRANAKVFG 180 TSFQRVASCF VQGLSDRLAL IQPLGAVGLI GPITKSTAFS AEKDEALHLV YEICPQIQFG 240 HFVANASILE AFEGESSVHV IDLGMTLGLP HGYQWRNLID SLANRAGQPL HRLRITGVGN 300 SAERLQAIGN DLKLHAQSMK LNFEFSAVES SFENLKPQDF NLVDGDVLVV NSILQLHCLV 360 KESRGALNSV LQTLHQLSPK LMILVEQDTS HNGPFFLGRF MEALHNYSAI FDSLDAMLPK 420 YDTRRAKMEQ FYFGEEIKNI VSCEGPARVE RHERVEQWRR RMRRAGFQPA PLKMIAQAMK 480 WLEINTCEGY TVVEDKGCLV FGWKSKPIIA TSCWK*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MASGLYVQAE FSGDNTSDEV IGLDLNLSSM ACLPYPSSLS TLEENPAAWV IPFIDETSSH  60
KRLKQQHSSS YEFNNAGTNY CSLYSGSGSM CARGLDSLPR IHFRDHISAY TRRYLAVEAM  120
EEATATLMRG KEGESEEGGR GDATKLVQQL IACAEAVACR DKAHASTLLY ELRANAKVFG  180
TSFQRVASCF VQGLSDRLAL IQPLGAVGLI GPITKSTAFS AEKDEALHLV YEICPQIQFG  240
HFVANASILE AFEGESSVHV IDLGMTLGLP HGYQWRNLID SLANRAGQPL HRLRITGVGN  300
SAERLQAIGN DLKLHAQSMK LNFEFSAVES SFENLKPQDF NLVDGDVLVV NSILQLHCLV  360
KESRGALNSV LQTLHQLSPK LMILVEQDTS HNGPFFLGRF MEALHNYSAI FDSLDAMLPK  420
YDTRRAKMEQ FYFGEEIKNI VSCEGPARVE RHERVEQWRR RMRRAGFQPA PLKMIAQAMK  480
WLEINTCEGY TVVEDKGCLV FGWKSKPIIA TSCWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-62	153	514	26	378	Protein SCARECROW
5b3h_A	2e-62	153	514	25	377	Protein SCARECROW
5b3h_D	2e-62	153	514	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G237500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007227155.1	0.0	DELLA protein RGL1
TrEMBL	M5XQZ9	0.0	M5XQZ9_PRUPE; Uncharacterized protein
STRING	EMJ28354	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-64	RGA-like 1

Link Out ? help Back to Top
Phytozome	Prupe.1G237500.1.p
Entrez Gene	18794006