PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G224900.3.p
Common NamePRUPE_ppa005013mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 482aa    MW: 52544.1 Da    PI: 8.4001
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G224900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.3e-41185261278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+ak+yhr+h++C  hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Prupe.1G224900.3.p 185 CQVEGCNIDLSSAKDYHRKHRICANHSKSPKVIVEGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 261
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33178246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38183264IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNSVLLMEWN EKPPSLWDLE NLFMFGAKVT DNPKKLQPAD WGIEGERGMN SESFYSTGGD  60
GGSGVSGSDL GDGSSKSSKS ASVSSSVGES KKPNFNLDAF EGFPNDFIHK NESAKAEALG  120
SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNPKSSSL SVISSSMAKT KRSKSTGQSA  180
FAPHCQVEGC NIDLSSAKDY HRKHRICANH SKSPKVIVEG VERRFCQQCS RFHGLSEFDE  240
KKRSCRRRLS DHNARRRKPQ TEALRNPTRL SSSLFSTDER QQMSLVLDQA PSVYTRHPSN  300
LTWDGTCSFK FGQTKEYFPK PAKGGGTGGQ LNLANNGIPS SITMLYHDSS GLSPSKGTAA  360
EVLNRGAEES MISFNLGATQ DFHRALSLLS TSSWVSGEAK PVALDNNTNQ NYQNNIPQPG  420
MQAMTQGLPV SSGYWQTQHL SLNTQEAHVS HSHSNGSNHF HQDLHQFKGP YEFGSQTNQF  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G224900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222798.10.0squamosa promoter-binding-like protein 2
RefseqXP_020418927.10.0squamosa promoter-binding-like protein 2
RefseqXP_020418931.10.0squamosa promoter-binding-like protein 2
TrEMBLM5XD160.0M5XD16_PRUPE; Uncharacterized protein
STRINGEMJ239970.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-79squamosa promoter binding protein-like 2