PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G223500.2.p | ||||||||
Common Name | PRUPE_ppa023657mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 317aa MW: 34540.8 Da PI: 9.0745 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.1e-41 | 41 | 117 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q Prupe.1G223500.2.p 41 CLVDGCSSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDEGKRSCRRRLAGHNKRRRKPQL 117 **************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-33 | 34 | 102 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.274 | 38 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-39 | 39 | 120 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 41 | 114 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MENGSRGKLK DPGVSMMKSS SSAASLKRPR RTNNGAQIAS CLVDGCSSDL SECRDYHRRH 60 KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDEGKRS CRRRLAGHNK RRRKPQLEPM 120 SSNLGRFLSS YQGPRFLQFG SPQVCPTNAV MNSAWGGAMK AENDDVILHS HSQLSETRRN 180 LFPGSLSCEQ SIESMLSQAS ACQQLVGTNF ALGNSGNSHK MFANGLYCDV ESNRALSLLS 240 STPASRGEIG LSHAGQSSSI WPPQPLIPRL RYNVLGMEDD AAISNLVADG SSNANNMHFQ 300 GMFQIISDGS TAGAPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 41 | 114 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 114 | KRSCRRRLAGHNKRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G223500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224806.2 | 0.0 | squamosa promoter-binding-like protein 13A isoform X1 | ||||
Refseq | XP_020411259.1 | 0.0 | squamosa promoter-binding-like protein 13A isoform X2 | ||||
TrEMBL | A0A251R2N2 | 0.0 | A0A251R2N2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26005 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 8e-51 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G223500.2.p |
Entrez Gene | 18792702 |