PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G223500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 387aa    MW: 42608.1 Da    PI: 8.5372
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G223500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43e-41111187278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q 
  Prupe.1G223500.1.p 111 CLVDGCSSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDEGKRSCRRRLAGHNKRRRKPQL 187
                         **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-33104172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.274108185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.34E-39109190IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30111184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLNYTCSCFF SLFYFLFSGF LYNLDGGDQT KASFVLHFCL ISRLPSEAED CIRKTRGYLL  60
IKFETCDLGN MENGSRGKLK DPGVSMMKSS SSAASLKRPR RTNNGAQIAS CLVDGCSSDL  120
SECRDYHRRH KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDEGKRS CRRRLAGHNK  180
RRRKPQLEPM SSNLGRFLSS YQGPRFLQFG SPQVCPTNAV MNSAWGGAMK AENDDVILHS  240
HSQLSETRRN LFPGSLSCEQ SIESMLSQAS ACQQLVGTNF ALGNSGNSHK MFANGLYCDV  300
ESNRALSLLS STPASRGEIG LSHAGQSSSI WPPQPLIPRL RYNVLGMEDD AAISNLVADG  360
SSNANNMHFQ GMFQIISDGS TAGAPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301111841184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167184KRSCRRRLAGHNKRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G223500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224806.20.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A251R1R30.0A0A251R1R3_PRUPE; Uncharacterized protein
STRINGEMJ260050.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-50SBP family protein