PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G212700.1.p | ||||||||
Common Name | PRUPE_ppa018569mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29938.4 Da PI: 4.7521 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Prupe.1G212700.1.p 43 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 92 678******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.13E-31 | 42 | 99 | No hit | No description |
SMART | SM00380 | 6.6E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.705 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 44 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 44 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-21 | 44 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-12 | 44 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDFFNNSSKA NTSPSSSSKT KRKQQNQQTQ QPQQQQQQQQ ETRFLGVRRR PWGRYAAEIR 60 DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGSKARTNFV YSDMPHGSSV TSIISPDESQ 120 HDMSAFFATP LQPQPQTTNH QQSFFTQDPF DAYPYSGGSS GGFGSGSYGP VSGGDEPGSG 180 SGSGSQSHTE LPPLPPCVSS TCYGPDGVMG SDMDMGYFGF SEPTTNNGLD PMMSGSYMGF 240 DSNEFVQHSP LFGSMPPVSD AGIDGFDLGS SSAYFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-20 | 44 | 99 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G212700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225065.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | M5XK05 | 0.0 | M5XK05_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26264 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 5e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G212700.1.p |
Entrez Gene | 18790758 |