PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G196000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 178aa MW: 20815.9 Da PI: 10.1433 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.2 | 1e-26 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+ Prupe.1G196000.4.p 12 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 100 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-24 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MEFESEDAAK IFYDEYARRV GFVMRVMSCR RSERDGRILA RRLGCNKEGH CVSIRGKFGP 60 VRKPRASTRE GCKAMIHVKY DKSSKWVITK FIKDHNHPLV VSPREARQTM DEKDKKIQEL 120 TAELRNKKRL CTTYQEQLTA FTKIVEEYSD QLSKKVQNVV SNLKEFESID RELSQHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G196000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008222477.1 | 1e-130 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_016648093.1 | 1e-130 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020409810.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020409811.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021833156.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251R2Y8 | 1e-129 | A0A251R2Y8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008222477.1 | 1e-130 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-107 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G196000.4.p |