PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G196000.2.p | ||||||||
Common Name | PRUPE_ppa011038mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 148aa MW: 16831.3 Da PI: 9.2614 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.9 | 6.1e-27 | 44 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+ Prupe.1G196000.2.p 44 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 132 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-24 | 44 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDSDEGARAV ESSSSQALVL YEADSILEPY EGMEFESEDA AKIFYDEYAR RVGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GHCVSIRGKF GPVRKPRAST REGCKAMIHV KYDKSSKWVI 120 TKFIKDHNHP LVVSPREARQ TMCRLQP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G196000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008222477.1 | 1e-103 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_016648093.1 | 1e-103 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020409810.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020409811.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021833156.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 2e-26 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A251QZZ7 | 1e-105 | A0A251QZZ7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008222477.1 | 1e-102 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 8e-75 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G196000.2.p |
Entrez Gene | 18793542 |
Publications ? help Back to Top | |||
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